Installation with pip¶ Many users find it useful to use the pip program (or similar ones) to install python packages. As explained in previous sections the user should in any case ensure that all dependencies listed in the Prerequisites section are correctly installed. The simplest way to install PyTables using pip is the following:sudo port install py27-numpy py27-cython sudo port install py27-scipy py27-matplotlib py27-biopython py27-ipython+notebook sudo port install hdf5 netcdf+dap+netcdf4 sudo pip install netCDF4 sudo pip install MDAnalysis MDAnalysisTests

Nov 19, 2019 · # Install the app level packages # Rely mainly on pip to install Python packages to avoid # conflicts that appear when using debs. apt-get -y install \ libwebcam0-dev libwebcam0 libv4l-dev ... If you use Parsing from moments.LD, which reads vcf files and computes LD statistics to compare to predictions from moments.LD, you will need to additionally install. hdf5. scikit-allel. Changelog 1.0.8. Allow for variable migration rate by passing a function as the migration matrix (with thanks to Ekaterina Noskova/noscode)

To install without dependencies, run pip install--no-deps To compile the binary extension modules such that you can successfully run import pyuvdata from the top-level directory of your Git checkout, run: python setup.py build_ext --inplace Dec 15, 2020 · the Discussions section for in-depth references on topics such as Deploying Python applications or pip vs easy_install the PyPA specifications section for packaging interoperability specifications Additionally, there is a list of other projects maintained by members of the Python Packaging Authority.

Nov 29, 2015 · pip install --upgrade --no-cache-dir boto3 (for safety purposes you might want to install boto first then boto3) Install dev-tools that aid installation (I assume you have yum installed, if not install using your environment installation manager like apt-get etc)

Parallel HDF5¶ Read-only parallel access to HDF5 files works with no special preparation: each process should open the file independently and read data normally (avoid opening the file and then forking). Parallel HDF5 is a feature built on MPI which also supports writing an HDF5 file in parallel. To use this, both HDF5 and h5py must be ...hdf5 == 1.8.13; python == 3.8; 安装 环境更新(基础环境安装) # 安装相关依赖 sudo apt-get update sudo apt-get install -y build-essential libbz2-dev libssl-dev libreadline-dev libsqlite3-dev tk-dev git vim wget ruby Pyenv(python) 安装